YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77959582
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.80
Transmembrane Helix	10	32	0.83
Cytoplasmic	33	51	0.88
Transmembrane Helix	52	77	0.88
Non-Cytoplasmic	78	90	0.85
Transmembrane Helix	91	114	0.87
Cytoplasmic	115	122	0.76
Transmembrane Helix	123	144	0.89
Non-Cytoplasmic	145	154	0.82
Transmembrane Helix	155	177	0.93
Cytoplasmic	178	206	0.96
Transmembrane Helix	207	227	0.92
Non-Cytoplasmic	228	233	0.87
Transmembrane Helix	234	255	0.92
Cytoplasmic	256	379	0.82
Transmembrane Helix	380	401	0.82
Non-Cytoplasmic	402	426	0.41
Transmembrane Helix	427	461	0.61
Cytoplasmic	462	471	0.53
Transmembrane Helix	472	495	0.91
Non-Cytoplasmic	496	498	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLFAGLDF HTGLMLVLAL MFVLFYEAIN GFHDTANAVA TVIYTRAMRS QVAVVMAGVF  60
   61 NFLGVMLGGL SVAYAIVHLL PTDLLLNVSS AHGLAMVFSM LLAAIIWNLG TWYFGIPASS 120
  121 SHTLIGAIIG IGLTNALMTS TSIVDALNVP KMIQIFLSLI LSPIVGLVIA GLMVFLLRRY 180
  181 WNGTKKQQRI HLTPAEREKK DGKRKPPFWT RTALIISAIG VSFSHGANDG QKGIGLIMLV 240
  241 LIGVAPAGFV VNMNATGYDI ARTRDAVTHL QQYYQQHVEA LPHAVALKPL VPTPETLPNT 300
  301 PAQFHCDSSR AMIAIDHAQV LLANLQSYDD LTVDQRSHMR RLLMCVAETA GTVAKLPETS 360
  361 AEDRRFLNNL RTDLLETVEY APTWIIVAVA LALSLGTMIG WKRVAVTIGE KIGKKGMTYA 420
  421 QGVSAQMTAA VSIGIASYTG MPVSTTQVLS SAVAGTMLVD GGGVQSKTVK NIMLAWVLTL 480
  481 PISILLSGGL YWVALKFI