YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77959075, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDTTTVLDK TSVDKTTTGE KKLTPADIRG VFIRSNLFQG SWNFERMQAL GFCFSMVPAI  60
   61 RRLYPENSEE RKQAIKRHLE FFNTQPFVAA PILGVTLAME EQKANGAEID DAAINGIKVG 120
  121 LMGPLAGVGD PIFWGTVRPV LAALGAGIAM SGSLLGPLLF FVLFNLVRLL TRYYGVAYGY 180
  181 KKGVNIVSDM DGGLLQKLTE GASILGLFVM GALVNKWTHV NIPVVVSKIT NQNGETTVTT 240
  241 VQTILDQLMP GLVPLLLTFG CMWLLRRKVN ALWIIMGFFA IGIFGYWIGF LAP

Type	Start	End	Confidence
Cytoplasmic	1	80	0.75
Transmembrane Helix	81	99	0.46
Non-Cytoplasmic	100	140	0.52
Transmembrane Helix	141	164	0.90
Cytoplasmic	165	197	0.74
Transmembrane Helix	198	217	0.62
Non-Cytoplasmic	218	243	0.68
Transmembrane Helix	244	264	0.69
Cytoplasmic	265	270	0.79
Transmembrane Helix	271	290	0.96
Non-Cytoplasmic	291	293	0.78