YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238715026, gi...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMIKTRAAV AWGPNQPLSV EEVDLMPPQK GEVLVRIVAS GVCHTDAYTL SGKDPEGIFP  60
   61 VILGHEGGGI VEAVGEGVTS VAVGDHVIPL YTPECGECKF CRSGKTNLCQ AIRTTQGKGL 120
  121 MPDGTTRFSK NGQPIFHYMG TSTFSELTVV PEISLAKINK EAPLEEVCLL GCGVTTGMGA 180
  181 VINTAKVKPG DTVAIFGLGG IGLSAVIGAQ MAGASRIIGI DLNTSKFELA RKLGATDLIN 240
  241 PKDYDKPIQD VIVELTDGGV DFSFECIGNV NVMRSALECC HKGWGESVII GVAGAGEEIS 300
  301 TRPFQLVTGR VWRGSAFGGV KGRSELPGIV QQYLDGKFAL SDFITHTMGL DQINEAFDLM 360
  361 HEGKSIRTVI HFDQSSQTHS LQNS

Type	Start	End	Confidence
Cytoplasmic	1	166	0.59
Transmembrane Helix	167	185	0.40
Non-Cytoplasmic	186	384	0.57