YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77958235
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKTKRLMV MAGGTGGHVF PGLAVAHHLM AQGWQVRWLG TADRMEASLV PQHGIEIDFI  60
   61 QISGLRGKGL MAQLTAPVRI YRAVRQAKKI MRDYQPDVVL GMGGYVSGPG GLAAWLCGIP 120
  121 VVLHEQNGIA GLTNRWLARI AKRVLQAFPG AFPDADVVGN PVRTDVLALP LPAERLAGRE 180
  181 GPIRVLVIGG SQGARVLNQT MPQVAATLGE QVTVWHQVGK GALPDVLQAY QQAGQGDKHQ 240
  241 VVEFIDDMAA AYAWADVVVC RSGALTVSEV AAAGLPAIFV PFQHKDRQQY WNALPLEKAG 300
  301 AAKIIEQPQF TAQAVSGLLA EWDRSTLLTM AERARAVAIP DATERVAAEV VAASK

Type	Start	End	Confidence
Cytoplasmic	1	7	0.79
Transmembrane Helix	8	30	0.76
Non-Cytoplasmic	31	355	0.62