YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77958161
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESAVSLSLW QQCLARLQDE LPATEFSMWI RPLQAELSDN TLALYAPNRF VLDWVRDKYL  60
   61 NNINGLLNDF CGSEVPLLRF EVGSKPAVRA AHSHPVTASV SAPVAPVTRS APVRPSWDSS 120
  121 PAQPEHSYRS NVNPKHTFDN FVEGKSNQLA RAAARQVADN PGGAYNPLFL YGGTGLGKTH 180
  181 LLHAVGNGIM ARKANAKVVY MHSERFVQDM VKALQNNAIE EFKRYYRSVD ALLIDDIQFF 240
  241 ANKERSQEEF FHTFNALLEG NQQIILTSDR YPKEINGVED RLKSRFGWGL TVAIEPPELE 300
  301 TRVAILMKKA DENDIRLPGE VAFFIAKRLR SNVRELEGAL NRVIANANFT GRAITIDFVR 360
  361 EALRDLLALQ EKLVTIDNIQ KTVAEYYKIK VADLLSKRRS RSVARPRQMA MALAKELTNH 420
  421 SLPEIGDAFG GRDHTTVLHA CRKIEQLREE SHDIKEDFSN LIRTLSS

Type	Start	End	Confidence
Signal Peptide	1	15	0.71
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	467	0.99