YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77958069
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.88
Transmembrane Helix	26	47	0.81
Non-Cytoplasmic	48	56	0.76
Transmembrane Helix	57	80	0.88
Cytoplasmic	81	88	0.93
Transmembrane Helix	89	111	0.90
Non-Cytoplasmic	112	120	0.66
Transmembrane Helix	121	144	0.82
Cytoplasmic	145	157	0.82
Transmembrane Helix	158	181	0.89
Non-Cytoplasmic	182	189	0.84
Transmembrane Helix	190	211	0.88
Cytoplasmic	212	250	0.96
Transmembrane Helix	251	270	0.95
Non-Cytoplasmic	271	287	0.90
Transmembrane Helix	288	308	0.93
Cytoplasmic	309	317	0.85
Transmembrane Helix	318	337	0.95
Non-Cytoplasmic	338	341	0.76
Transmembrane Helix	342	367	0.85
Cytoplasmic	368	378	0.78
Transmembrane Helix	379	401	0.90
Non-Cytoplasmic	402	409	0.84
Transmembrane Helix	410	429	0.95
Cytoplasmic	430	490	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQINDITIID DTKLKRAITA AALGNAMEWF DFGVYGFVAF ALGQVFFPGA DPGLQMIAAL  60
   61 ATFSVPFLVR PLGGLFFGAL GDKYGRQKVL SVTIIIMSVS TFCIGLIPSY ASIGIWAPIL 120
  121 LLLAKLAQGF SVGGEYTGAA IFVAEYSPDR KRGFLGSWLD FGSIAGFVLG AGVVLLISSI 180
  181 VGEAQFLEWG WRIPFFIAAP LGLIGIYLRH ALEETPTFQQ HVDKIDSDSR NSIAEPPRVS 240
  241 FREILTKQWK NLTICVGIVI ATNVTYYMLL TYMPSYLSHS LHYSEDHGVL IIIAIMLGML 300
  301 FVQPVMGLMS DRYGRKPFII FGSLGLFILA IPSFILINSG VIGLIFCGLL ILAILLNCFT 360
  361 GVMASILPAM FPTHIRYSAL AIAFNVSVLV AGLTPTAAAW LVETTQNLFM PAYYLMVVAL 420
  421 IGLVTGIFMK ETANKPLKGA TPAASDRAEA KEILQEHHDH IEQNIEDIDQ QIAELEKKRK 480
  481 NLIAQHPDID