YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77957976
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.98
Transmembrane Helix	5	27	0.88
Cytoplasmic	28	41	0.93
Transmembrane Helix	42	63	0.93
Non-Cytoplasmic	64	94	0.90
Transmembrane Helix	95	114	0.91
Cytoplasmic	115	121	0.88
Transmembrane Helix	122	144	0.89
Non-Cytoplasmic	145	176	0.93
Transmembrane Helix	177	198	0.90
Cytoplasmic	199	211	0.88
Transmembrane Helix	212	232	0.92
Non-Cytoplasmic	233	247	0.85
Transmembrane Helix	248	265	0.94
Cytoplasmic	266	273	0.87
Transmembrane Helix	274	294	0.93
Non-Cytoplasmic	295	313	0.80
Transmembrane Helix	314	332	0.97
Cytoplasmic	333	351	0.92
Transmembrane Helix	352	374	0.93
Non-Cytoplasmic	375	392	0.90
Transmembrane Helix	393	414	0.90
Cytoplasmic	415	421	0.96
Transmembrane Helix	422	443	0.90
Non-Cytoplasmic	444	447	0.83
Transmembrane Helix	448	470	0.90
Cytoplasmic	471	490	0.92
Transmembrane Helix	491	510	0.96
Non-Cytoplasmic	511	618	0.98
Transmembrane Helix	619	638	0.94
Cytoplasmic	639	655	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPEIGSFLL CLALAISLLL SLYPQWGAAR QDARMMDTGR PLTYGMFATI ALSFICLIYA  60
   61 FVVNDFTVSY VAANSNSHLP VYYRIAASWG AHEGSLLLWV LLLSCWSLAV ALFSRSMPDD 120
  121 AVARVLSVLG MITGGFLLFI ILTSNPFTRT LPDFPIDGND LNPLLQDIGL IFHPPLLYMG 180
  181 YVGFSVAFAF AIASLMAGRL DSAWARWSRP WTQAAWVFLT LGIVLGSAWA YYELGWGGWW 240
  241 FWDPVENASF MPWLAGTALI HSLAVTEKRG TFKAWTVLLA ITAFSLCLMG TFLVRSGVLV 300
  301 SVHSFASDPA RGMFILAYLV IVIGGSLLLY AVKGAQVRSR TQHEVFSRET FLLGNNVLLI 360
  361 AAMLVVLLGT LLPLVHKQLG LGSISIGEPF FNTMFTWLMA PMALLMGIGP LVRWRRDEPS 420
  421 KLWRRLSVAL VVTLLLSILL PWLLQDTIAG MTVVGLMMAI WVIILTLMEL HERATHRHSF 480
  481 WRGLSHLSRS HWGMVLGHLG VAVTVIGIAF SQNYSVERDV RMKAGDSIDI HDYHFVFRDV 540
  541 HDIKGPNYTG GVGIIDVTRN GKPEATLHAE KRYYSVARSM MTEAAIDGGL TRDLYAALGE 600
  601 ELDDGSWAVR LYYKPFVRWI WYGGLFMAIG GICCMLDPRY RMSKKLKRGA ASEAE