YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238785461, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVILGYIVV LGAVFGGYMI VGGHLGALYQ PAEFLIIGGA GIGAFIAGNN GKAIKATMKA  60
   61 MPRLMRRSKY NKVLYMDLMA LLYRLLAKSR QQGMLSLERD IENPRESEIF SNYPRILADK 120
  121 ILVEFITDYL RLIVSGNMNA FEIEALMDEE IETHEQECEV PAGSLAMVGD SLPAFGIVAA 180
  181 VMGVVHALAS ADRPAAELGA LIAHAMVGTF LGILLAYGFI SPLATLLRQQ SAETTKMMQC 240
  241 IKVTLLSSLN GYAPQIAVEF GRKTLYTTER PSFIELEEHV RRVKAPVPQA TEEDA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.79
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	33	0.78
Transmembrane Helix	34	54	0.91
Cytoplasmic	55	72	0.90
Transmembrane Helix	73	87	0.50
Non-Cytoplasmic	88	170	0.50
Transmembrane Helix	171	190	0.91
Cytoplasmic	191	199	0.46
Transmembrane Helix	200	221	0.92
Non-Cytoplasmic	222	295	0.53