YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77956876
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLFSTSNIL VHIPLGAGGY DLSWIEAIGT LFGLLCIWFA SKEKIINYLF GLINVTLFAV  60
   61 IFFQIQLYAS LLLQLFFFVA NIYGWYAWSK QTPDNQAELK IRWLSLPKAL GWAAVCIAGI 120
  121 TLMTLHIDSV FAWLTRVAVT VMQSLGANVQ MPELQPDAFP FWDSTMMVLS IVAMILMTRK 180
  181 YVENWLIWVV IDVISVAIFA YQGVYAMALE YVILTLIALN GSWLWMKSAA RNHSRPLSVQ 240
  241 GK

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.87
Transmembrane Helix	20	39	0.91
Cytoplasmic	40	44	0.86
Transmembrane Helix	45	65	0.89
Non-Cytoplasmic	66	70	0.70
Transmembrane Helix	71	89	0.93
Cytoplasmic	90	108	0.91
Transmembrane Helix	109	127	0.96
Non-Cytoplasmic	128	157	0.89
Transmembrane Helix	158	177	0.93
Cytoplasmic	178	184	0.82
Transmembrane Helix	185	203	0.92
Non-Cytoplasmic	204	207	0.70
Transmembrane Helix	208	226	0.90
Cytoplasmic	227	242	0.90