YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238785693, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASSLFPPN SNSKRLLIAF TVTTLFMIVE AIGGWLSGSL ALLADAGHML TDSAALFIAL  60
   61 MAVHFSQRKP DSRHTFGYLR LTTLAAFVNA AALLLIVVLI VWEAVQRFVS PHEVMGVPML 120
  121 IIAIAGLLAN IFCFWILHRG EEEKNINVRA AALHVLGDLL GSVGAIIAAI VILTTGWTPI 180
  181 DPILSVLVSA LVLRSAWRLL KESFHELLEG APQEIDIAKL RQGLCTDIYE VRDVHHVHLW 240
  241 QVGDQRLMTL HVQVIPPRDN DELLQRIQHH LLHHYNIGHA TIQMEYQGCE TPDCSINQAT 300
  301 PAGGHHHHHH

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	37	0.92
Non-Cytoplasmic	38	45	0.74
Transmembrane Helix	46	66	0.91
Cytoplasmic	67	77	0.92
Transmembrane Helix	78	102	0.86
Non-Cytoplasmic	103	115	0.85
Transmembrane Helix	116	137	0.93
Cytoplasmic	138	150	0.89
Transmembrane Helix	151	173	0.90
Non-Cytoplasmic	174	179	0.66
Transmembrane Helix	180	197	0.84
Cytoplasmic	198	310	0.87