YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238785573, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYTQKAVKK VSGVHYFAQG WQLISRPGIR RFVILPLLVN ILLMGGAFWW LFNRIGDWVP  60
   61 QLMSHVPDWL QWLSYLLWPI MVISVLLVFS YLFSTLANFI AAPFNGLLAE QLEASLTGKP 120
  121 LPDTGIIGIM KDLPRIMARE WRKLAYYLPR ALVLLLLYFI PGIGQTLAPV LWFLFSAWML 180
  181 SVQYCDYPFD NHKVSFQEMR SALRQNKVDN LQFGALVSLF TMIPFLNLVI MPVAVCGATA 240
  241 MWVDRYREQF IQPSR

Type	Start	End	Confidence
Cytoplasmic	1	31	0.97
Transmembrane Helix	32	52	0.96
Non-Cytoplasmic	53	74	0.90
Transmembrane Helix	75	94	0.94
Cytoplasmic	95	145	0.95
Transmembrane Helix	146	172	0.82
Non-Cytoplasmic	173	219	0.93
Transmembrane Helix	220	243	0.89
Cytoplasmic	244	255	0.94