YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238785572, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQDLRLILI VVGAIAIIAL LLHGLWTSRK ERSSLFRDRP VKRLKQERVE TPIESLDEGV  60
   61 GEVRVRTAHP QEKPSFSHTD DDDEEMPVIQ HDDAKPAQVK TESRQQPFAS VQTEYDDPLL 120
  121 GGLSAEQPPH ESQRDPLLGS VDESYSQPRH VEPQHAAEPA PRTVPQPEPV APAPEVKPQK 180
  181 LKETVLVLHV AAHHGGALGG ELLLQSVLQS GFQFGEMGIF HRHLSPAGSG PVLFSLANMV 240
  241 KPGSFDPDTM ADFSTPGVSM FMMVPSYGDA HQNFKLMLQS AQRIADDVGG VVLDDERRMM 300
  301 TPQKLETYKA RIREVLEANA TA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.79
Transmembrane Helix	7	27	0.94
Non-Cytoplasmic	28	322	0.86