YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77955807, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITIFGTGY VGLVTGACLA DVGHHVLCMD VDQGKIEKLK NGQIPIYEPG LDNIVKHTVE  60
   61 AGRLAFTTDT EEAVKHGTLQ FIAVGTPPDE DGSADLQYVL AVAKSIGQHM EDYKVVVDKS 120
  121 TVPVGTGDKV KAAVRAQLDK RGLELDFDVV SNPEFLKEGA AINDFMKPDR IVVGTESEKA 180
  181 ADLLREVYYP FNRNHDRMIF MDIRSAELTK YAANAMLATK ISFMNEVANL AERLGADIEE 240
  241 VRRGIGSDPR IGYHFIYPGC GYGGSCFPKD VQALARTARD CDYESKLLNA VEAVNYAQKH 300
  301 VLFDKVSHYF QGDLKGKTVA LWGLAFKPNT DDMREASSRT LMEDLWKAGA KVQAFDPEAM 360
  361 EETQRIYGDH EGLTLCGTKE QALKGADVLV ICTEWKEFRS PDFDVIASTL SEPVVFDGRN 420
  421 LYEPEMLDRH GLIYYAIGRG RNQFPSAV

Type	Start	End	Confidence
Signal Peptide	1	20	0.90
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	448	0.99