YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCTA2_CUPMC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.93
Transmembrane Helix	13	32	0.95
Non-Cytoplasmic	33	48	0.86
Transmembrane Helix	49	69	0.93
Cytoplasmic	70	80	0.89
Transmembrane Helix	81	103	0.92
Non-Cytoplasmic	104	152	0.95
Transmembrane Helix	153	174	0.85
Cytoplasmic	175	188	0.89
Transmembrane Helix	189	211	0.89
Non-Cytoplasmic	212	227	0.84
Transmembrane Helix	228	252	0.87
Cytoplasmic	253	300	0.84
Transmembrane Helix	301	322	0.47
Non-Cytoplasmic	323	334	0.42
Transmembrane Helix	335	350	0.44
Cytoplasmic	351	351	0.26
Transmembrane Helix	352	380	0.77
Non-Cytoplasmic	381	388	0.43
Transmembrane Helix	389	408	0.59
Cytoplasmic	409	452	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVDNRKPL YRSLYFQVIV AIISGVVLGH YYPTAGEAMK PLGDGFIKLI KMIIAPIIFC  60
   61 TVVVGIAGME DMKKVGKTGG LALLYFEVVS SIALLLGLLI INIVKPGAGM NVDPSTLDTK 120
  121 GIAAYTGPGK MQGTVDFLMN VIPNTVVDAF AKGEILQVLL FAVMFGFALH KFGGRGTLVF 180
  181 DFIEKFSHVL FTIVGYIMKV APLGAFGAMA FTIGKYGVSS LLQLGQLMAT FYATCLVFIF 240
  241 VVLGTIARLH GFSIWKFIKY IKEELLIVLG TSSSESVLPR MMAKLENLGV RKSVVGLVIP 300
  301 TGYSFNLDGT SIYLTMAAVF IAQATNTDMN LTQQLTLLAV LLLTSKGAAG VTGSGFIVLA 360
  361 ATLSAVGHVP VAGLALILGI DRFMSEARAL TNLIGNGVAT VVVAKWTGDL DLERMRRRLD 420
  421 DETDSEADEP EMVLDQTATH MPAVDPAVTR RG