YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77955713, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	40	0.92
Non-Cytoplasmic	41	74	0.91
Transmembrane Helix	75	97	0.88
Cytoplasmic	98	117	0.96
Transmembrane Helix	118	140	0.90
Non-Cytoplasmic	141	148	0.82
Transmembrane Helix	149	170	0.93
Cytoplasmic	171	177	0.92
Transmembrane Helix	178	199	0.92
Non-Cytoplasmic	200	209	0.86
Transmembrane Helix	210	232	0.92
Cytoplasmic	233	265	0.93
Transmembrane Helix	266	289	0.84
Non-Cytoplasmic	290	310	0.90
Transmembrane Helix	311	331	0.91
Cytoplasmic	332	363	0.96
Transmembrane Helix	364	386	0.86
Non-Cytoplasmic	387	393	0.73
Transmembrane Helix	394	413	0.92
Cytoplasmic	414	440	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTASLPAG AGKGFAELRS RLWFVFLALL VYRIGAHIPV PGINPDRLAA LFDQNQGTIL  60
   61 SLFNMFSGGA LERMSIFALG IMPYISASII MQLMTAVSPQ LEQLKKEGEA GRRKISQYTR 120
  121 YGTVILALVQ GFGISVGLAS QGVTFNDSFS FHFVAVVSFV CGAVFMMWLG EQITERGIGN 180
  181 GISLLIFAGI VAGLPGAIGQ TLEQARNGEM SLLVVLGIGV LAIAVVGFVV FMERGQRRLT 240
  241 INYAKRQQGR RVFAQQSSHL PLKVNMAGVI PPIFASSILL FPASLGQWFG QGEGMEWLSD 300
  301 ISQALAPSQP LYIILFAAAV IFFCYFYTAL MYNPKEVADN LKRSGAFIPG IRPGEQTAKY 360
  361 IDGVLTRLTL FGAMYIAAVS LFPQFLMVAG NVPFYLGGTS LLIVVVVVMD FMAQVQSHLM 420
  421 SHQYESLMKK SNLKGYGRNG