YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77955162, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	192	0.99
Transmembrane Helix	193	212	0.94
Cytoplasmic	213	219	0.77
Transmembrane Helix	220	240	0.93
Non-Cytoplasmic	241	254	0.86
Transmembrane Helix	255	276	0.93
Cytoplasmic	277	286	0.82
Transmembrane Helix	287	305	0.96
Non-Cytoplasmic	306	310	0.72
Transmembrane Helix	311	334	0.87
Cytoplasmic	335	342	0.86
Transmembrane Helix	343	364	0.91
Non-Cytoplasmic	365	373	0.83
Transmembrane Helix	374	391	0.86
Cytoplasmic	392	630	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPETHMPRL FVLFSLLCCL LAPSLSSAES VEWGQFSKRL ELSRFVDYWK EEGARSIEDV  60
   61 RGLPAQAWTR NGSDSVSLGY GDDIYWFRVE LTNTLKSEAS NFLEIGYPVL DHVEVYREVD 120
  121 GSMQEPLLLG DKRPFYDRPI HHRNFIVPLP LPPESTTTVY LRVDTTSSMQ VPMTLWDQDA 180
  181 FYSAEQARSL FEGIYYGIVL VMILYNLFVF MAVGERSFLY YVGYIAAMPL FLASLHGVTF 240
  241 QYLWPEATWW NDQSIIVFLN LVVLFGGAFS IRFISVTRQN HPWLNRWTWA MIMTAGMLAL 300
  301 AGLLIPYQWL ILPSILVAFV GCSTMLMLSV VRWIKKDPAA RYYTVAWVFM LFGGIVLALS 360
  361 KFTMLPRNLL TENATQVGSA LGVILLSIAL ADRLNREKKK SFAAQQKLLR EERKARLAQE 420
  421 KSLRIQQEAN ALLEERVQER TRDLEILNEQ LLELSATDPL TGLKNRGHFD KKFQSDVVHA 480
  481 YRFEETLSLL IVDIDHFKGF NDTYGHLVGD DCLKMVADCI KQHVTRPQDL AARYGGEEFV 540
  541 VLLPDTPEAG ACRVAELIRE DIQKMAFRVS DQVLHLTVSI GVCSCAPSQA DATKALFACA 600
  601 DGALYRAKAE GRNRVVANTQ AGQGLAVCQA