YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120555162, gi...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIDFPLVLV VLTFVTGAVW LADIAFLRKR RLAGAEQGGQ VDESADEFED REPWLVDISR  60
   61 SFFPVLAVVL VLRSFLIEPF QIPSGSMLPT LEVGDFILVN KYAYGLRLPV AGTKIVEIGD 120
  121 PERGDVMVFR YPEDGSTNYI KRVVGLPGDH IRYRNKQLFI NDEPVPRDFV ARLPPMERWR 180
  181 EQLGEVEHDL YLTMGRVSGS GEGEWVVPEG HYFVMGDNRD NSNDSRFWGT VPDEMVVGKA 240
  241 FAIWMHWKSL TSLPSFDRVG GIQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.72
Transmembrane Helix	7	27	0.82
Cytoplasmic	28	60	0.78
Transmembrane Helix	61	77	0.66
Non-Cytoplasmic	78	263	0.80