YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77866806, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.98
Transmembrane Helix	26	49	0.93
Non-Cytoplasmic	50	70	0.94
Transmembrane Helix	71	93	0.91
Cytoplasmic	94	101	0.90
Transmembrane Helix	102	123	0.89
Non-Cytoplasmic	124	157	0.91
Transmembrane Helix	158	180	0.87
Cytoplasmic	181	199	0.91
Transmembrane Helix	200	221	0.88
Non-Cytoplasmic	222	252	0.92
Transmembrane Helix	253	273	0.93
Cytoplasmic	274	303	0.95
Transmembrane Helix	304	327	0.91
Non-Cytoplasmic	328	347	0.89
Transmembrane Helix	348	368	0.95
Cytoplasmic	369	385	0.87
Transmembrane Helix	386	407	0.91
Non-Cytoplasmic	408	418	0.91
Transmembrane Helix	419	440	0.86
Cytoplasmic	441	480	0.87
Transmembrane Helix	481	500	0.77
Non-Cytoplasmic	501	529	0.86
Transmembrane Helix	530	551	0.91
Cytoplasmic	552	562	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVVSSANP GLSQPLLAKR TSKRWLISAF ITTAIVALPV LSVIFLALFP DENIWPHLIE  60
   61 TTLPRYLTTT IKLMIGVGAL TLLIGLATAW AVTMCEFPGR KFFEWALLLP FAVPAYVIAY 120
  121 VYTSLLDYAG PVQRTLREWF GWQNASDYWF PEIRSLEGAI LMIGLVLYPY VYLLGRAAFL 180
  181 EQSPSLFAVS RSLGHSALST FFRVVLPIAR PAIAVGLSLV LMETLNDFGT VDFFAVQTLT 240
  241 RGLFDTWMNL GNLGGAAQIA TTMLIFVVIL VTLERYSRRR QQQYAARDNR DPIHRFTMSF 300
  301 PRQMICVVVC AVPLVFGFII PGATLGYYAW EYFDVSWNPD FIQNTFNSLF LSSAAALTTL 360
  361 IIGVTLAYSR RLHNTRGMQI LMRLSSLGYA MPGAVLAVGV IVPLAGFDNW LDSLMRDYLG 420
  421 VSTGLLLSGT AFALIFAYTV RFLAVSAGSV ESALQKITPS MDMASRSLGH TPGKTLINVH 480
  481 LPMLRGTLVT AALVVFVDCM KELPATLILR PFNYETLATY VYQFASDEQL YHSALPALII 540
  541 VLAGIIPIIL MNRSISNSRT MA