YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68555476, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	243	0.92
Transmembrane Helix	244	263	0.92
Non-Cytoplasmic	264	272	0.79
Transmembrane Helix	273	294	0.90
Cytoplasmic	295	309	0.81
Transmembrane Helix	310	329	0.90
Non-Cytoplasmic	330	337	0.66
Transmembrane Helix	338	356	0.93
Cytoplasmic	357	364	0.80
Transmembrane Helix	365	383	0.94
Non-Cytoplasmic	384	389	0.86
Transmembrane Helix	390	411	0.93
Cytoplasmic	412	422	0.80
Transmembrane Helix	423	442	0.97
Non-Cytoplasmic	443	454	0.84
Transmembrane Helix	455	477	0.88
Cytoplasmic	478	484	0.74
Transmembrane Helix	485	505	0.88
Non-Cytoplasmic	506	508	0.85
Transmembrane Helix	509	529	0.86
Cytoplasmic	530	532	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRIGNQFR NGFHRQALAH LQHDGRGAEQ ADRREVAPRI ERHVLVDMRV EGVGRDRAEA  60
   61 DRVAVGRCLG HGIHADVATG ARPVLNDDRL AELFGHALAH GAGYEVGGAA CGVGHDEADR 120
  121 LAREAVGGKG GRRHGEREQG SGQDGTAARR EAVGRHDSGI SSFLLFLRGA RLWRAAQAPA 180
  181 IVWESRHWRG PGEHCVFWHT IAGFPPRAAR IERAGPAYAR TASPVPASQK SLSPPVEVPA 240
  241 AQRVGLAVAA IGAVLFSAKA IVAKLMYRYN VDAVMVITLR MLFAVPLFMA IGWWQARKLP 300
  301 ALSWADRGRV VFLGFIGYYL SSFLDFIGLQ YITASLERLI LFLTPSFVLL TTALVFRRPI 360
  361 AARQWISLLL AYVGIVLVFA HDLDVSGPQV WLGGALVLGS AMSYGVYLIL SGELVQRVGS 420
  421 LRLVAYAMCV STFCCVVQYL ALGRPIAELA QPAPVMWLSV VNAVFCTVLP VSLTMIAVAR 480
  481 IGAPMASQAG MIGPVSTLLL AFWLLGEPIS GVQMIGSALV LGGMYLLSTK KA