YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77951919, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGEVLDVLN GWIEQFGLLS EGWRAGVLVF LLVLGTAAVA YIASHVISAL ERKFASTHNL  60
   61 WDDAILHAVR RPVVAFVWLQ GVYWAAEVAH HFSEAEVFKA NGTLLQIGFV WVVVWFFIRL 120
  121 IKQFENILTS PIKMRKPMDY TTVNAISKLS RAVVIITAAL TALQTLGFSI SGVLAFGGVG 180
  181 GIAVGFAAKD LLANFFGGFI IHLDRPFKVG DWVRSPDRSI EGTVEHIGWR LTTIRTFDKR 240
  241 PLYVPNAAFT TIAVENPSRM TNRRIYETIG IRYADVHSMK TIVDEIREML KNHEEIDANE 300
  301 TLIVNFLAFN SSSLDIMVYT FTKTTQWVRF HEVKEDVLLK ISDIIENHGA EVAFPTRTLH 360
  361 LPDGVRVDGR DSSKREDSND KSSDKDADSG KSGKNIDHDG GYGEADSESG DGE

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.81
Transmembrane Helix	25	47	0.91
Cytoplasmic	48	67	0.79
Transmembrane Helix	68	86	0.77
Non-Cytoplasmic	87	101	0.72
Transmembrane Helix	102	121	0.90
Cytoplasmic	122	143	0.87
Transmembrane Helix	144	163	0.69
Non-Cytoplasmic	164	165	0.43
Transmembrane Helix	166	193	0.73
Cytoplasmic	194	413	0.81