YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68549865, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCMPFCSYI PLFRYFFFNP LFTNGLSLFL WSDGGIFQPW FIMSETPQAH RFETLQVHAG  60
   61 QRPDPTTKSR AVPIYQTTSY LFDSAKHGAD LFALKEFGNI YTRMTNPTTD VLEQRVAALE 120
  121 GGRAALAVAS GHSAQFIAVA TLCEAGDNIV SSSYLYGGTY NQFKVAFRRL GIGVKFVEGC 180
  181 NVEAFRTAID EHTKALYLES IGNPAFHVPD FEAIAAVAAE HGIPLIVDNT FGCSGFLCRP 240
  241 LEHGASIIVE SATKWIGGHG TSMGGVIVDG GTFNWGNGKF PLLSEPSDGY HGMKFYETFG 300
  301 DLAFIIKARV EGLRDIGPAI SPFNSFMLLQ GLETLSLRVQ RHADNTMELA RWLNEHSAVQ 360
  361 WVNYPGLESH PTHELAKKYL NHGFGCVLTF GIKGGYEKAV GFIDSVQLAS HLANVGDAKT 420
  421 LVIHPASTTH SQLTLAEQES AGVTADMIRV SPGIEHIDDI KADFEQAFAK LR

Type	Start	End	Confidence
Cytoplasmic	1	14	0.72
Transmembrane Helix	15	35	0.71
Non-Cytoplasmic	36	472	0.95