YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68243770, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRFSGVGH WIPERFNPVC MEILFLFFLI ICNGLFAMSE IALITAKRSR LSKLAEDGDK  60
   61 SAAVAMKLGQ DPTRFLSTIQ IGITSIGILN GIVGEGALAG PLAIRMQSLG MDAEISHVIA 120
  121 TVVVVLSITY VTIVVGELVP KRLGQFNPEG IARLVARPMY TLSTITRPFG RLLSASTDAI 180
  181 LRLTGNYPQA TPSVTEEEIH AMLEEGSEAG VIEQHEHEMV RNVFRLDDRQ LGSLMVPRAD 240
  241 IVSLDVSRPL EENINRVTES EHSRFPVCNG GLQSLLGVVN AKQLLSKTLK GGLTEFTSQL 300
  301 QPCVYVPETL TGMELLDHFR TSGSQMVFVV DEYGEIQGLV TLQDMLEAVT GEFVPRNLED 360
  361 SWAVERQDGS WLLDGLIPVP ELKDTLELKC VPEEDKGLYH TLSGLMMWLL GRMPRTGDIM 420
  421 VWENWTLEIV DLDGQRIDKV LASRLKEERA PEDGHPPDSH PVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.57
Transmembrane Helix	19	44	0.84
Cytoplasmic	45	74	0.57
Transmembrane Helix	75	89	0.69
Non-Cytoplasmic	90	90	0.02
Transmembrane Helix	91	105	0.61
Cytoplasmic	106	114	0.44
Transmembrane Helix	115	136	0.89
Non-Cytoplasmic	137	463	0.55