YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAA_SHEPC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.90
Transmembrane Helix	14	34	0.90
Non-Cytoplasmic	35	58	0.87
Transmembrane Helix	59	77	0.94
Cytoplasmic	78	93	0.80
Transmembrane Helix	94	115	0.89
Non-Cytoplasmic	116	123	0.86
Transmembrane Helix	124	145	0.91
Cytoplasmic	146	153	0.79
Transmembrane Helix	154	174	0.92
Non-Cytoplasmic	175	178	0.74
Transmembrane Helix	179	197	0.72
Cytoplasmic	198	203	0.51
Transmembrane Helix	204	220	0.73
Non-Cytoplasmic	221	223	0.53
Transmembrane Helix	224	241	0.83
Cytoplasmic	242	257	0.78
Transmembrane Helix	258	277	0.89
Non-Cytoplasmic	278	289	0.67
Transmembrane Helix	290	312	0.90
Cytoplasmic	313	324	0.80
Transmembrane Helix	325	349	0.86
Non-Cytoplasmic	350	359	0.82
Transmembrane Helix	360	381	0.92
Cytoplasmic	382	391	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKAIRNFLS QESAGGILLL VAVVFAMLMA NSPLSGLYQG FLGTDVQVRV GALDIHKPLL  60
   61 LWINDGLMAL FFLLIGLEVK RELLEGALSS VAQASLPSFA AIGGMLVPAG IYLLFNYGDP 120
  121 VTQAGWAIPA ATDIAFALGI MALLGNRVPV ALKVFLLALA IIDDLGVIVI IALFYSSDLS 180
  181 TISLAIASVA ILGLVGLNRK GITALTPYGI LGLILWVAVL KSGVHATLAG VIIAFCIPLR 240
  241 AKDGSSPSEH LEHSLHPWSN FLILPVFAFA NAGVALGNMS LDTLLSPVPI GIALGLILGK 300
  301 PIGVMLFSFI AVKLKLARLP DNVGWMQIAP VAAMCGIGFT MSMFIASLAF EQADPMYGDL 360
  361 ARLGTLIGSF IAALVGYFWL SKVLPKKGVL L