YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77808693, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTNIRAFAQ QKSRLSALRL VLAFILGAST ALSFAPYSFW SIYPIAMALA LWQSESLSPK  60
   61 ANFYYWLSFG FGCFAVGISW VHVSIDTFGG MPLIASIGLM ALLTLYLSLY PAITGCALSW 120
  121 LSQGKINPFW RNLALFPALW TLTEWARGWV MTGFPWLWAG YSQTQGPLKP LASIIGALGL 180
  181 SFLIAMLSGA LALCFAKRFK SLLLLIPIIA LAAWTAPKLS EIHPTGETVK VALVQGNIPQ 240
  241 SMKWEPEALW PTLLKYMDLS REHFDADIIV WPEAAIPAPE SMVQDFLDNA NKVANLNDTS 300
  301 IITGIISHQH NEFYNSLIVL GNHSQKQQTA PDYEGDGSNQ FKKHHLLPIG EFVPFETLLR 360
  361 PIAPFFNLPM SSFARGEYQQ PNLSALGHKV APAICYEIAF PEQLRDSVNQ GTDLLLTVSN 420
  421 DAWFGTSNGP LQHMEIAQMR AIELGRPLVR ATNNGVTAVV DENGNITAAL PQFETGVLRA 480
  481 TIPLVAGQTW FAKMGQNPLL ILCGLLVLFG LQRCFKAR

Type	Start	End	Confidence
Cytoplasmic	1	14	0.85
Transmembrane Helix	15	35	0.85
Non-Cytoplasmic	36	38	0.58
Transmembrane Helix	39	54	0.76
Cytoplasmic	55	62	0.71
Transmembrane Helix	63	83	0.94
Non-Cytoplasmic	84	92	0.67
Transmembrane Helix	93	118	0.79
Cytoplasmic	119	128	0.74
Transmembrane Helix	129	151	0.77
Non-Cytoplasmic	152	170	0.80
Transmembrane Helix	171	194	0.89
Cytoplasmic	195	200	0.72
Transmembrane Helix	201	217	0.81
Non-Cytoplasmic	218	497	0.87
Transmembrane Helix	498	515	0.59
Cytoplasmic	516	518	0.59