YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68542288, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEKPQFIK SKAAVAWGPG QPLKIEEVDV MLPKAGEVLV RIVATGVCHT DAFTLSGDDP  60
   61 EGVFPAILGH EGGGIVEQVG EGVTSVQVGD HVIPLYTPEC GECKFCLSGK TNLCQKIRAT 120
  121 QGKGLMPDGT TRFYLDGKPI FHYMGCSTFS EYTVLPEISL AKVNKSAPLE EICLLGCGVT 180
  181 TGMGAVMNTA KVEEGATVAI FGLGGIGLSA IIGATMAKAS RIIAIDINES KFELAKKLGA 240
  241 TDCINPKLLD KPIQEVIVEM TDGGVDYSFE CIGNVNVMRS ALECCHKGWG ESVIIGVAGA 300
  301 GQEISTRPFQ LVTGRVWRGS AFGGVKGRSE LPHIVERYMA GEFKLDDFIT HTMGLEQINE 360
  361 AFELMHEGKS IRSVIHFDK

Type	Start	End	Confidence
Cytoplasmic	1	171	0.76
Transmembrane Helix	172	190	0.64
Non-Cytoplasmic	191	195	0.79
Transmembrane Helix	196	217	0.78
Cytoplasmic	218	379	0.74