YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68548599, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNIDKPTVK NRGIYLLPNL FTTAGLFSGF YAVIASMNGQ FESAAIAVFV AMLCDGLDGR  60
   61 VARLTNTQSE FGAEYDSMAD MVSFGMAPAL IAYNWALSDL GKIGWLAAFI YCAGAALRLA 120
  121 RFNTQVGVAD KRWFQGLASP AAAAVIAGTV WLGNQYRIEA DSVSYLFAVV TICTGLLMVS 180
  181 NFRYHSFKEV DWRGKVNFIV ILLVVGVFVV ISVEPALILC LGFYLYALSG PVITVRSVRK 240
  241 LKVSHVVGDD EDEHEQGYSQ DSPDNQVKAQ ADKGEFDKSA KDD

Type	Start	End	Confidence
Cytoplasmic	1	13	0.95
Transmembrane Helix	14	35	0.93
Non-Cytoplasmic	36	42	0.79
Transmembrane Helix	43	62	0.79
Cytoplasmic	63	76	0.75
Transmembrane Helix	77	97	0.79
Non-Cytoplasmic	98	102	0.82
Transmembrane Helix	103	122	0.93
Cytoplasmic	123	132	0.93
Transmembrane Helix	133	153	0.94
Non-Cytoplasmic	154	162	0.85
Transmembrane Helix	163	184	0.91
Cytoplasmic	185	195	0.83
Transmembrane Helix	196	228	0.82
Non-Cytoplasmic	229	283	0.55