YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAB_SHEAM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.63
Transmembrane Helix	20	38	0.78
Non-Cytoplasmic	39	40	0.44
Transmembrane Helix	41	62	0.70
Cytoplasmic	63	66	0.46
Transmembrane Helix	67	86	0.67
Non-Cytoplasmic	87	94	0.63
Transmembrane Helix	95	114	0.90
Cytoplasmic	115	123	0.81
Transmembrane Helix	124	144	0.80
Non-Cytoplasmic	145	146	0.61
Transmembrane Helix	147	166	0.83
Cytoplasmic	167	202	0.75
Transmembrane Helix	203	222	0.86
Non-Cytoplasmic	223	238	0.76
Transmembrane Helix	239	261	0.88
Cytoplasmic	262	300	0.83
Transmembrane Helix	301	330	0.78
Non-Cytoplasmic	331	350	0.76
Transmembrane Helix	351	374	0.84
Cytoplasmic	375	389	0.57
Transmembrane Helix	390	409	0.73
Non-Cytoplasmic	410	451	0.83
Transmembrane Helix	452	472	0.84
Cytoplasmic	473	478	0.79
Transmembrane Helix	479	499	0.90
Non-Cytoplasmic	500	528	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLTLGQSLF ANFLGNSPRW YKFAILSFLA INPILFYLNP FIAGWVLVIQ FIFTLAMALK  60
   61 CYPLQPGGLL AIEAVIIGMT SPTQVLHEIQ ANLEVLLLLV FMVAGIYFMK QLLLYAFTKM 120
  121 LTKVRSKIVV SMLFCIASAF LSAFLDALTV IAVIITVAVG FYSIYHKVAS GKDFSSDHDH 180
  181 TSEAPEQLNE SELESFRGFL RNLLMHAGVG TALGGVCTMV GEPQNLIIAA QANWQFGEFA 240
  241 IRMSPVTVPV FFAGILTCFI VEKFKWFGYG AKLPEAVHKI LSEYDAYEDA RRTPKDKVKL 300
  301 IVQALVGVWL IVGLAFHLAS VGLIGLSVII LNTAFNGITD EHALGKAFEE ALPFTALLAV 360
  361 FFAVVGVIID QQLFAPVIQW ALSYEGNVQL VIFYIANGLL SMVSDNVFVG TVYINEVKAA 420
  421 LLNGQITRDQ FDLLAVAINT GTNLPSVATP NGQAAFLFLL TSALAPLIRL SYGRMVMMAL 480
  481 PYTIVLSIVG ILAIESGFLT DMTQYFYDSH LINHHTAAEA AGKALGGH