YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68513738, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGISFTQA FGTVLKRDLK IAIRHRGDIF NPLLFFVMVV TLFPLGIGPE PQVLTRIAPG  60
   61 IIWVAALLAS MLSLERLFKA DFVDGSLEQM LLSPQPLYIT VLAKVLAHWL LTGVPLILVS 120
  121 PLLAVLLHLE DNSYGALMST LALGTPVLSL LGAIGVALTV GLRKGGVLLS LLILPLYIPV 180
  181 LIFATSAIDA AGMNLPYDGQ LAIIGAMLVG SLTLAPFAVG ASLRVSTN

Type	Start	End	Confidence
Cytoplasmic	1	28	0.95
Transmembrane Helix	29	47	0.96
Non-Cytoplasmic	48	54	0.78
Transmembrane Helix	55	74	0.91
Cytoplasmic	75	104	0.89
Transmembrane Helix	105	127	0.87
Non-Cytoplasmic	128	135	0.84
Transmembrane Helix	136	160	0.87
Cytoplasmic	161	166	0.82
Transmembrane Helix	167	188	0.90
Non-Cytoplasmic	189	200	0.77
Transmembrane Helix	201	223	0.91
Cytoplasmic	224	228	0.86