YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119765681, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.99
Transmembrane Helix	7	30	0.92
Non-Cytoplasmic	31	37	0.80
Transmembrane Helix	38	58	0.93
Cytoplasmic	59	70	0.89
Transmembrane Helix	71	92	0.91
Non-Cytoplasmic	93	134	0.90
Transmembrane Helix	135	157	0.88
Cytoplasmic	158	181	0.86
Transmembrane Helix	182	201	0.96
Non-Cytoplasmic	202	232	0.91
Transmembrane Helix	233	256	0.87
Cytoplasmic	257	268	0.85
Transmembrane Helix	269	288	0.93
Non-Cytoplasmic	289	328	0.88
Transmembrane Helix	329	351	0.89
Cytoplasmic	352	390	0.95
Transmembrane Helix	391	412	0.95
Non-Cytoplasmic	413	421	0.78
Transmembrane Helix	422	444	0.78
Cytoplasmic	445	452	0.75
Transmembrane Helix	453	474	0.87
Non-Cytoplasmic	475	480	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNLRPLLFI LGTFLSMLAG FMLIPLLFAL LHGDETSGAF MISSLATGAA ASFCISSGQQ  60
   61 KNIKLNIRDM FLLTSITWLV VSLFAAMPFT LYHGINYTDA FFETMSGITT TGSTVLSGLD 120
  121 SMDRSILIWR SLLQWLGGIG FIVMAVAVLP FLNVGGMRLF RTESSDWSDK STPRTQDMAK 180
  181 NLFLVYILLT ILCGLGYHLA GMDWFEAINH AMTTLSTGGY STSDESMAHF SPAAHWVGTS 240
  241 FMLAGGLPLL IFVQMLRGRS LTVWNDAQVK GFLLFVALVS VALSFWLADV KDLAFMDALR 300
  301 LTSFNVVSVV TTTGYGLTDY GSWGPLANVA FLFLMFVGAC SGSTSGGIKI FRFQIAGAIM 360
  361 REQLKQQIHP AGIFRERYNN RPISEDIIRS LVTFILLFMG VTVALAVFLV AVGVDPMSSL 420
  421 TGAITAVTNV GPGLGPVIGP AGNFASLPDS AKWALSLGML LGRLEILTVA VLFHPKFWHY 480
  481