YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68548514, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.92
Transmembrane Helix	18	38	0.93
Non-Cytoplasmic	39	48	0.78
Transmembrane Helix	49	66	0.92
Cytoplasmic	67	74	0.77
Transmembrane Helix	75	93	0.96
Non-Cytoplasmic	94	112	0.86
Transmembrane Helix	113	133	0.81
Cytoplasmic	134	138	0.84
Transmembrane Helix	139	158	0.73
Non-Cytoplasmic	159	180	0.51
Transmembrane Helix	181	202	0.93
Cytoplasmic	203	222	0.71
Transmembrane Helix	223	240	0.64
Non-Cytoplasmic	241	271	0.79
Transmembrane Helix	272	294	0.83
Cytoplasmic	295	304	0.82
Transmembrane Helix	305	329	0.81
Non-Cytoplasmic	330	337	0.73
Transmembrane Helix	338	359	0.91
Cytoplasmic	360	368	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRDHARKNI WQRMHIDLPL LLGLLAIMGF GLFVIWSASG EDPAMLERQL VRMGLSLGIM  60
   61 LFMAQINPEI LRRWALPIYI AGIILLLGVH FFGEINKGAQ RWLNLGFMEF QPSELIKLAF 120
  121 PITMAWFISK FTLPPKKRYL AAAAVIMLIP TLLIAKQPDL GTSILVAASG IFVLFLSGMS 180
  181 WYIVLGLLAS VLSFLPILWY FLMHDYQRRR VLTLLDPEKD PLGAGYHIIQ SKIAIGSGGV 240
  241 DGKGWLHGTQ SQLEFLPERH TDFIFAVIGE EFGLIGAIVL LAMYIYVIGR GLVIASRAQT 300
  301 NFARLLAGSI TLTFFVYIFV NIGMVSGILP VVGVPLPLIS YGGTSMLTLM TGFGILMSIQ 360
  361 THRRFVDR