YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAB_SHEPC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.72
Transmembrane Helix	20	39	0.83
Non-Cytoplasmic	40	41	0.41
Transmembrane Helix	42	63	0.61
Cytoplasmic	64	67	0.41
Transmembrane Helix	68	87	0.62
Non-Cytoplasmic	88	95	0.63
Transmembrane Helix	96	115	0.91
Cytoplasmic	116	124	0.71
Transmembrane Helix	125	145	0.74
Non-Cytoplasmic	146	148	0.56
Transmembrane Helix	149	167	0.89
Cytoplasmic	168	203	0.81
Transmembrane Helix	204	223	0.87
Non-Cytoplasmic	224	239	0.80
Transmembrane Helix	240	262	0.88
Cytoplasmic	263	301	0.88
Transmembrane Helix	302	332	0.80
Non-Cytoplasmic	333	351	0.74
Transmembrane Helix	352	375	0.86
Cytoplasmic	376	390	0.62
Transmembrane Helix	391	410	0.74
Non-Cytoplasmic	411	452	0.81
Transmembrane Helix	453	471	0.86
Cytoplasmic	472	479	0.68
Transmembrane Helix	480	500	0.87
Non-Cytoplasmic	501	528	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLTMSQAFI GNFLGNSPKW YKIAILSFLI INPILFFYVS PFVAGWVLVL EFIFTLAMAL  60
   61 KCYPLQPGGL LAIEAVAIGM TSANQVLHEI EANLEVLLLL VFMVAGIYFM KQLLLFAFTK 120
  121 IITKVRSKIL VSLMFCLTSA FLSAFLDALT VIAVIIAVAV GFYAIYHKVA SGKDFSAVHD 180
  181 HTSESNNQLN NSELESFRGF LRNLLMHAGV GTALGGVCTM VGEPQNLIIA AQANWQFGEF 240
  241 VIRMSPVTVP VLIAGILTCL LVEKFRIFGY GAKLPDAVHK ILCDYAAHED AHRTNKDKMK 300
  301 LVIQVLVGVW LIAGLALHLA SVGLVGLSVI ILTTAFNGIT DEHALGKAFE EALPFTALLA 360
  361 VFFAVVAVII DQHLFAPVIQ WALSYEGNTQ LVIFYIANGL LSMVSDNVFV GTVYINEVKA 420
  421 ALIDGQITRD QFDLLAVAIN TGTNLPSVAT PNGQAAFLFL LTSALAPLIR LSYGRMVWMA 480
  481 LPYTIVLSVV GVLAIETGFL EQATQYFYDS HMIIHHSAKD VIAPLTSH