YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82744016, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTHAALYEQ GKARLEALRQ LAPRQQQSLV EKMQQHGISR RDFMKWSAMV TGMLALPLPF  60
   61 SNLVAEAAEL ADRVPLIWLH MAECTGCSES LVRADTPNLD SLIFDHISLE YHETLMAASG 120
  121 WQAEENLEHA LEAYKGRYLL AVEGAIPTAN NGSFLTVGCK GHTGLEIIKH AAEGAAAIIS 180
  181 VGTCAAFGGV QAAYPNPTGA KGVHEVVSKP VINLGGCPPS EKNIVGTLMY FIMFGRLPAL 240
  241 DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDHGAKE GYCLYKVGCK GPYTYNNCPT 300
  301 ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGLDATADT IGAVILGATV 360
  361 VGIGAHAVAS IFAKPLEE

Type	Start	End	Confidence
Cytoplasmic	1	45	0.63
Transmembrane Helix	46	60	0.35
Non-Cytoplasmic	61	349	0.59
Transmembrane Helix	350	372	0.65
Cytoplasmic	373	378	0.35