YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_SHEPC
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTLVNKIWY QGHPLQWLLL PLSFVFGFIT FVRRGLFQLG LKAQTILPVP VIVVGNITVG  60
   61 GSGKTPMVIY LIELLRAHGF NPGVISRGYG ANIDGVKQVA YNASATDVGD EPAMIVARSG 120
  121 VPMVVGSKRV EAANVLIAEH GVDVIICDDG LQHYALGRDI ELVVIDGQRR LGNEYLLPAG 180
  181 PLREGPWRLK DVDFVVINGG NADVGQFEMQ LAPTQVKAVD GNIITTDFDK SQPLVAMAGI 240
  241 GNPTRFFDSL QAQGYQVVLS HGFDDHQAYD KKQLCDLAKD LPLMMTEKDA VKCRDFAQEN 300
  301 WWYLAVNAKL SPQFDEQLLS RLHEVVAAKQ GNSHGIR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.63
Transmembrane Helix	15	37	0.83
Cytoplasmic	38	45	0.58
Transmembrane Helix	46	63	0.55
Non-Cytoplasmic	64	337	0.68