YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77815480, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVEASDSHQ VGHRLDQLSK ALSSGMFVHV RQMLQNMAAS DIALILESSP PKARQVLWQL  60
   61 IDQEQLGAIL DELSEELKDP LISTMSPERV AKATASMDTD DLAYILRSLP DTVYKQVLQS 120
  121 MSLQNRQRVE QALSYPDETA GSLMNTDTVT LRPDVNIDVV LRYLRQRGNL PDTTDTLYVV 180
  181 DKQDKVLGGV RLADLLTCDP NTPIRNIMDP DIESIPVGMS DSEVAQLFER HDWVSAPVVD 240
  241 SDNKLLGRIT IDDVVDVIRE DAEHSMMGMA GMDDDEDTFA PVLKSTFRRS LWLTINLFAA 300
  301 LLAASVSSMF EGTIEKFATI AILMTIVPSM GGVAGNQTLV LVIRAIALGH IGQSNARWLI 360
  361 GKELAIGFLN GLLWSILVFV AVSLWKGDTA LASLIAGAML INMTVAGLAG ASIPLILKRL 420
  421 KIDPALAGGM VLTTVTDVTG LFAFLGLATL YLMN

Type	Start	End	Confidence
Cytoplasmic	1	290	0.97
Transmembrane Helix	291	310	0.94
Non-Cytoplasmic	311	319	0.71
Transmembrane Helix	320	343	0.87
Cytoplasmic	344	363	0.82
Transmembrane Helix	364	385	0.91
Non-Cytoplasmic	386	393	0.74
Transmembrane Helix	394	416	0.92
Cytoplasmic	417	425	0.88
Transmembrane Helix	426	450	0.87
Non-Cytoplasmic	451	454	0.78