YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77809632, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLIALVT LLPTLAMAAS GHNVHLEDAK VDLHDKASLE RGVDLFQHYC SGCHSTQYQR  60
   61 YERVATDIGI SADDMRNKYM FTDAKIGELM QSAIPAKDAA KWFGATPPDL TLVARVRGED 120
  121 WVYSYLKGFY KDPSRPFGVN NTVFPSVGMP HVLEELQGTP VKQEDGSIVV TGGKLNAEEY 180
  181 DQAVRDITGF LVYSAEPVRL EREAMGWWVL GFLFIFFIVA YLLKKEYWKD VH

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	203	0.99
Transmembrane Helix	204	223	0.97
Cytoplasmic	224	232	0.94