YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAA_SHEAM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.90
Transmembrane Helix	14	37	0.84
Non-Cytoplasmic	38	58	0.92
Transmembrane Helix	59	77	0.95
Cytoplasmic	78	94	0.88
Transmembrane Helix	95	115	0.94
Non-Cytoplasmic	116	124	0.84
Transmembrane Helix	125	145	0.92
Cytoplasmic	146	153	0.77
Transmembrane Helix	154	174	0.89
Non-Cytoplasmic	175	178	0.68
Transmembrane Helix	179	197	0.67
Cytoplasmic	198	203	0.44
Transmembrane Helix	204	220	0.70
Non-Cytoplasmic	221	223	0.47
Transmembrane Helix	224	241	0.82
Cytoplasmic	242	257	0.80
Transmembrane Helix	258	277	0.85
Non-Cytoplasmic	278	289	0.71
Transmembrane Helix	290	312	0.88
Cytoplasmic	313	327	0.81
Transmembrane Helix	328	350	0.88
Non-Cytoplasmic	351	359	0.89
Transmembrane Helix	360	381	0.93
Cytoplasmic	382	391	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKAIRNFLS QESAGGILLL VAVALAMLLA NSPLSGLYQG FLNTEMQVRF GALDINKPLL  60
   61 LWINDGLMAL FFLLIGLEVK RELLEGALSS PSKASLPTFA AIGGMLVPAA IYLFFNFDDP 120
  121 VTKVGWAIPA ATDIAFALGI MALLGNRVPV ALKVFLLALA IIDDLGVIVI IALFYSTDLS 180
  181 MLSLVIAAIA VTGLVALNRK GVTSLAPYGV LGIILWIAVL KSGVHATLAG VVIAFCIPLR 240
  241 AKDGSSPSEH LEHSLHPWSN FLILPVFAFA NAGVPLGNVG FDSILSPVPV GIALGLLLGK 300
  301 PIGVLLFSYA AVKLRLAELP KGIGWHQIAP VAVMCGIGFT MSMFIASLAF EHGGELYGDL 360
  361 ARIGILLGSL FAAVIGYFWL SKVLPKAGER I