YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|146292581, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	276	0.91
Transmembrane Helix	277	300	0.83
Non-Cytoplasmic	301	316	0.59
Transmembrane Helix	317	343	0.69
Cytoplasmic	344	348	0.56
Transmembrane Helix	349	372	0.78
Non-Cytoplasmic	373	392	0.80
Transmembrane Helix	393	414	0.87
Cytoplasmic	415	423	0.80
Transmembrane Helix	424	446	0.87
Non-Cytoplasmic	447	454	0.82
Transmembrane Helix	455	477	0.89
Cytoplasmic	478	510	0.95
Transmembrane Helix	511	534	0.84
Non-Cytoplasmic	535	665	0.93
Transmembrane Helix	666	688	0.90
Cytoplasmic	689	697	0.76
Transmembrane Helix	698	718	0.91
Non-Cytoplasmic	719	726	0.80
Transmembrane Helix	727	745	0.97
Cytoplasmic	746	764	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQFHCVTV GNPNAGKSTL FNALTGANQQ VGNWSGVTVE KKTGHFTLNG ADVYLTDLPG  60
   61 IYDLLPAGNS CDCSLDEQIA QQYLAEQRID GIINLVDATN IERHLYLTAQ LRELAIPMVV 120
  121 VLNKIDAAIK RGIKVDLQKM SQELGCPVIG VCSRDPADVE KVQAQVLDLL QGRVSEAPLM 180
  181 LDYDEQIEAG VQLLCRKDPN LSRGRALAML GNGSGCGSCK NAELQSEVNV CTQLIAQQGH 240
  241 DIEVMVATTR FNFVERVFQG SVKADGFLTL SDKLDKLVLH PVFGIPVFLF VMYLMFMFSI 300
  301 NIGSAFIDFF DVFAGALFVD HFGAFLTSMG SPDWLVTILA GGVGQGIQTV STFIPVIAAL 360
  361 FLGLSILESS GYMARAAFVV DGLMRRIGLP GKAFVPMIVG FGCSVPAIMA TRTLGSERER 420
  421 IVTGMMAPFM SCGARLPVYA LFAAAFFQDS GQNLVFLLYI IGIFAAIGTG LLLRSTLLPG 480
  481 TSSAVVMELP SYELPKLKAV MVRTGKRTKS FILGAGKTIV LVVTLLNFIN AIGVDGSFGH 540
  541 ENSQASLLSV ASQKVTPVFA PMGLEQDNWP ATVGIITGIF AKEAVVGTLN SLYTSAVPED 600
  601 AELAPLMDSF NEALATIPAN LFGLDLEDPL KLSVGDVSNT EVAAESQGVA NSTFSALQSG 660
  661 FTTKIAAFSY LLFILLYTPC VAAMGALVNE FGSRWATFAA TWTFSLAYGS ATIVYQAATF 720
  721 NEHPMQSSLW IGFFLLALAG FYLWLKRKGR RTQQIIPGIR IITE