YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|146293472, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKASHYDAHM RAQPHLSSPT PFNPHHNGKT EPDKRSLYQH AEHYGQSKVA KSAWQSFGLA  60
   61 AFAGGFIALA FVFYITVTTG ASGSAWGLVR LAGGLAFSLG LMLVVICGGE LFTSTVLSSV 120
  121 AWAQKKVTTK QLVMCWTRVY LGNLLGAMVM LLLIMSARMY LLDGGRWGIN ALTIAQHKLH 180
  181 HGWFQAFSLG ILCNMLVCLG VWMTFASRDA LTKAILLMLP VAMFVSSGFE HSIANLFMVP 240
  241 LGIAIHLFAD QTFFTSAAID AAQFSDLTLS HFVIKNLIPV TLGNIVGGGI FVGLGYWWIE 300
  301 QAKPQHPSNI ERHTPTLTLV NALTATSSYL NNDMPTDTAL ANEPALSISP DAHIYSISAG 360
  361 DQPTMLNAKA VSKPIPKMCV SDVMDRHPIT LSADQSVYAG LKLLSDANVR SAPVVDDKQA 420
  421 LVGFISQQDL LRSLWAQEFT RGVPDKVADL MQTEVLTVSP KDPLDALIEL MVVDRQKLFP 480
  481 VTDSGLMIAS TYQSYEERLR HAYATKPSAF PVIEQGKLCG MVTREEIAKA VCGAFYD

Type	Start	End	Confidence
Cytoplasmic	1	56	0.97
Transmembrane Helix	57	77	0.94
Non-Cytoplasmic	78	94	0.79
Transmembrane Helix	95	118	0.88
Cytoplasmic	119	138	0.85
Transmembrane Helix	139	161	0.91
Non-Cytoplasmic	162	182	0.94
Transmembrane Helix	183	205	0.92
Cytoplasmic	206	213	0.82
Transmembrane Helix	214	234	0.86
Non-Cytoplasmic	235	241	0.62
Transmembrane Helix	242	264	0.60
Cytoplasmic	265	276	0.58
Transmembrane Helix	277	299	0.92
Non-Cytoplasmic	300	537	0.74