YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68514938, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAQSSKIG LTGKILIGMG AGILIGLLLR NFFGGSEWVQ DYITEGFFHV IGTIFINSLK  60
   61 MLVVPLVFIS LVCGTCSLSE PSKLGRLGGK TLAFYLFTTA IALVVAISAA VLVQPGNASL 120
  121 ASESMQYSAK EAPSLADVLI NIVPSNPMKA LSEGNMLQII IFAVIFGFAI SHIGERGRRV 180
  181 AALFDDLNEV IMRVVTLIMQ LAPYGVFALM GKLALTLGME TLESVIKYFM LVLVVLLFHG 240
  241 FVVYPTLLKL FSGLSPLMFI RKMRDVQLFA FSTASSNATL PVTMEASEHR LGADNKVASF 300
  301 TLPLGATINM DGTAIMQGVA TVFIAQVFGI DLTITDYAMV VMTATLASIG TAGVPGVGLV 360
  361 MLAMVLNQVG LPVEGIALIL GVDRMLDMVR TAVNVTGDTV ATVVIAKSEG ALNEAVFNDP 420
  421 KAGKTAGSFD AEVHRGE

Type	Start	End	Confidence
Cytoplasmic	1	9	0.98
Transmembrane Helix	10	33	0.86
Non-Cytoplasmic	34	53	0.85
Transmembrane Helix	54	76	0.86
Cytoplasmic	77	91	0.87
Transmembrane Helix	92	113	0.94
Non-Cytoplasmic	114	153	0.96
Transmembrane Helix	154	174	0.91
Cytoplasmic	175	193	0.88
Transmembrane Helix	194	215	0.86
Non-Cytoplasmic	216	227	0.80
Transmembrane Helix	228	248	0.91
Cytoplasmic	249	307	0.58
Transmembrane Helix	308	334	0.67
Non-Cytoplasmic	335	336	0.35
Transmembrane Helix	337	371	0.69
Cytoplasmic	372	437	0.64