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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68546403, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSTEPDLQL KSPIQRNYNR AVFYTYIGVI VMACLTAWFF FDREKTQQLA QREEQIDRHV  60
   61 LQIDLLLESS IRAVKSLRDV AVDHLRLGEL VRKDRLPQYE KFNEDGQYFT LEPHYAQGNK 120
  121 PFNNMGRITG IGSLKDRSDK FYQELEMLFE LSLSFPVAKE AAPKASAIYY ISKRRMMSYF 180
  181 PWPLDEQRFR DELLNKKQFQ LATPAMNPQR SVFWSEAYLD STDKGLLTTL GVPIYLEDEF 240
  241 IGSINLDMTL ASLARQIRLY FKMPGTVILL DQSNNILSHS DMAGNDLKRV LHISQKIPSE 300
  301 LHSLPESELF DAQGGIIRNG YYIHSVALHN APWRLLYIQD VDDLFQESWD KLQLTFILVV 360
  361 LALSVLVTIV HWQTRRSFVS PASRLLSHLE GCSQQPRAVP EKITPGWEPW FQLVSRIFEE 420
  421 NQQYTKHLAE QNKRLDKLVA RRTERLKETT ERREREYALL RSLLDSIPEA IVFKDKEGHY 480
  481 LGCNKAAERM LGFSEAEMIG LSSEELTSPE QGSRIRAEDE QVLTERKPLR YQEKIELAGK 540
  541 PVLLDTLKLP FYNRRGELMG LIAVWRDVTR EYESAEQLRL SEERYHLAMD AVEDGLWDWY 600
  601 LDSEQIICNP AYYSMLGYKT NEFPALLSTI DSLIHPDDRI RVQEYREQYL KDPIGAYEIE 660
  661 FRMRAKTGQY HWMLSRGRVV EFTQDAQPKR MVGTHKDITR HKSNEVALLE AKQDAELANL 720
  721 YKSEFLANMS HEIRTPMNAI IGMLQLAGRT SLTEQQKDYL DKASFSAQSL LRIINDILDF 780
  781 SKIEAGKLEL EKVAFPLDKV LDHSLDLNAL RAQEKGIELL LYAPVSAGIM LKGDPLRLGQ 840
  841 VLINLLSNAV KFTQNGEIEL GCEDVGERDH RITLKFWVRD TGIGISREQQ DKLFDAFAQA 900
  901 DGSTTRKYGG TGLGLSISKH LVSMMGGTMQ VESEPGVGST FSFTVSFEIA EEAKVVPMVV 960
  961 PERLASLRTL VVDDNPTALQ IYSSVMRDFH FEVETASTGA EALYKLCKQQ VDLVLLDWMM1020
 1021 PEMDGIQVID AIDEMVAEGK LAARPVIIIM TAYAAEPLKV DLDSDRVFAM LQKPFKASSL1080
 1081 FDEIIRAFAP PAPKALPAPP VEDEGEHQGV VLLVEDNFIN QQVATELLKS AGYEVDVADN1140
 1141 GQISLEMVGK RSYDAILMDI QMPVMDGLTA ATELRKRYSF DELPIIAMTA HAMSGDREKS1200
 1201 LAAGMNAHIT KPIVLNELFE TLSHWIGHKE KHRGNP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle