YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77810426, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.45
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTPAHDLSA MPNSLAVDVA IIGAGPSGAI AASLLHQQGK RVLVLEKQHF PRFSIGESLL  60
   61 PCCMQFIEEA GMLDALNAAG FQHKNGAAFR RNGTYTTFDF TDKFTPGPGT TFQVQRASFD 120
  121 KLLADTAQSQ GVDIRYGETV EAIDLTENPC LMVRNEQGEL YQISAQYVLD ASGFGRVLPR 180
  181 LLDLESPSCL PQRSAIFTHV EDNISDPNFD RNKILISVHP EHKDIWYWLI PFSNGRCSLG 240
  241 VVAEPQLLAR LQGSLEQQLM SIVNEEPGLK ALLANAKVVQ ECATLKGYSA NVSRLATDKF 300
  301 ALLGNAGEFL DPVFSSGVTI AMQSASMAAK CVTKQLNGET VDWQADYSAP LMQGVNTFRT 360
  361 YVQAWYDGRF QDVIFYEEPN PRIKQMICSI LAGYAWDLNN PFVKDSERRL NMVVELCQNQ 420
  421 VAIPEFAEA

Type	Start	End	Confidence
Cytoplasmic	1	13	0.34
Transmembrane Helix	14	32	0.41
Non-Cytoplasmic	33	429	0.93