YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145565327, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTQITQNPN TYQSDARFPQ VQDDEIDLRE LFSVIWQGKW LIIAITAIFA VGAVIFAIKQ  60
   61 PNIYKSEALL APVSEEQGGG LSALASQFGG LASLAGVNLG GKNGTDKTQL AIEVLKSRQF 120
  121 TSEFIQKHNI LADLMAAEKW DADADKIIYA PALYNEQTNT WVREVKAPIK PEPSMQEAYK 180
  181 VFNKIISVNS VKETGMVTLS VEHLSPIVAQ QWVTWLIQDI NKVMKDRDVA EANRSSEFLN 240
  241 KQIALTNVAD IRTILYKLVE EQAKTIMFAE VRDEYVFKTI DPALAPEEKA KPKRALICVL 300
  301 GTILGGMLGV MLVLVRHFMR KEQDLEHKA

Type	Start	End	Confidence
Cytoplasmic	1	37	0.76
Transmembrane Helix	38	58	0.93
Non-Cytoplasmic	59	78	0.72
Transmembrane Helix	79	100	0.57
Cytoplasmic	101	294	0.83
Transmembrane Helix	295	315	0.93
Non-Cytoplasmic	316	329	0.75