YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120597685, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQENSLAPLA AKPSRLGWFD DVLLLGIMAV LAGCGLIYEY LLSHYAGRIL GALEAAIYTM  60
   61 IGLMIVSMGL GAFAARKIRD AFTGFVILEL TVALCGSLAI LITAAVIGFG QQLPLIIAST 120
  121 LGLPPDQLPD GGVIGTLQKL SEYLPYMWGV LLGLMIGMEI PLIARVRQSL SDEHLLHNAG 180
  181 TIYGADYIGA GIGAAIWVGF MLAIDIQLAA ALTASFNLLA GFVFIWRFWP KIRQAKLLLI 240
  241 GHLVVTGVLL VLAIHGPRWE QEFNNLLYKD KVVYSKATRF QQLTFTERLR GNGLAPVYAL 300
  301 YINGRLQFSS IDEHIYHTFL VHPTLAASAR HNKVLIIGGG DGLGLKQVLR WQPEQVTLLD 360
  361 LDADLVKLFK SPDTDMPENL TQAMLALNGD ALNDPRVTII NDDAFNGVDK LIATGVKYDA 420
  421 IIVDLPDPSH PDLNKLYSDY FYRKLKELMS SDGALTVQST SPYHAPKAFI SVAKTLVVAG 480
  481 FDVKQYHHNV PSFGEWGWSI ATAGGRDAQY RLAQLTEFPI KDDWLTLGLV KGAFEFPANF 540
  541 YLDAVNIKPN ELGSLQLYHY HLQAWSENQG IDLF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	54	0.78
Transmembrane Helix	55	74	0.95
Cytoplasmic	75	84	0.83
Transmembrane Helix	85	107	0.92
Non-Cytoplasmic	108	143	0.93
Transmembrane Helix	144	164	0.93
Cytoplasmic	165	178	0.85
Transmembrane Helix	179	201	0.87
Non-Cytoplasmic	202	207	0.73
Transmembrane Helix	208	229	0.92
Cytoplasmic	230	237	0.86
Transmembrane Helix	238	257	0.96
Non-Cytoplasmic	258	574	0.99