YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|146294124, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKPLTLAVA FILAPLSAFA ANFTEGTHYT QISDKAPSAE PKLTEFFSFY CHNCFNMETN  60
   61 YLPDIKANLD KKVAFDSKHV DFMNSDIGTE VMRSLAVIQS VDNKDALTHA MFAAIQGEEG 120
  121 ANGHDHSAPG HKHEPQINNR DDIKQIFAKF GIDAAKYDEL ADSKNTNEKL ALWRAQQNQF 180
  181 KVESVPAFIV NDKYAVNLSS IKTLDELISL INYLAIEKDA QAPKSSGGSL TWLFLAFAAV 240
  241 IGLSRQKRIR

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	227	0.99
Transmembrane Helix	228	244	0.72
Cytoplasmic	245	250	0.59