YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|112807250, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKMRSDRLK IVFMLCLAFV TSGGKYFESK VAQLIRDETE DIKCFVEGKK DFTCFWEKED  60
   61 GTNYSQDNYT FTYTYMNENK MDCAVSSLFL LSSNRSVFFC KLPKALFFTS LDVQVLRDGQ 120
  121 MLYNRSLNVE NILLTDPPRN VTVWSSGKEG QLNVSWLPPA VKYIDDSLIY EVRYAVEDSH 180
  181 MGKVEETKAS TMLVLRGLQP DTRYKVWVRV KPDGVSYKGY WSSWTSPVIA VTPPGSMDPL 240
  241 IVLLVVFIIL ILCLLSMTVI LSHHKFLLKK LWPDIPTPEH KFPGLFTVYK GDFKEWMSQN 300
  301 SGSMWARSVQ MYTEELPSPL EVLSEVSLSP LDERKLVRDE DQRSDSGLTE PPHWLMEQLR 360
  361 ALQENPESLS RSTLLQSHDT YITLNHSSGG QREDDVFEET LPLQTLFTSA GTSSINASHS 420
  421 DLGSLRQSSA SGRLSSQSSF EDPNHPWPPK GPGYAYMAVA DSGVSLDYSP MSSSRIIEIG 480
  481 KRSFYANEYK NEIFGYKWPF SAQQVQSGY

Type	Start	End	Confidence
Signal Peptide	1	24	0.94
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	239	0.99
Transmembrane Helix	240	262	0.92
Cytoplasmic	263	509	0.98