YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145566200, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEFITLLGQ SFEQSPWLFV TLSFIFAATI GSFLNVVIHR LPIMMKREWQ QECNQYLQEY  60
   61 HADIVNQVGI DRLNKPIDSY PEKYNIVVPG SACPQCKTAI KPWHNMPVLG WLILRGKCAA 120
  121 CHAPISTRYP IIELITGLLI AALAWHFGPS WQFVFASLLT FVLIALTGID LDEMLLPDQL 180
  181 TLPLLWLGLL LNLHHTFASP TDAIIGAAAG YLSLWSIFWV FKLLTGKEGM GYGDFKLLAV 240
  241 FGAWLGWQML PLVILLSSLV GAVVGIGMII SKRNQMDNPI PFGPYIAAAG WIALVWGNTI 300
  301 VDWYLGTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.96
Transmembrane Helix	17	38	0.95
Cytoplasmic	39	124	0.98
Transmembrane Helix	125	147	0.75
Non-Cytoplasmic	148	152	0.61
Transmembrane Helix	153	171	0.86
Cytoplasmic	172	179	0.64
Transmembrane Helix	180	198	0.78
Non-Cytoplasmic	199	202	0.58
Transmembrane Helix	203	225	0.81
Cytoplasmic	226	243	0.45
Transmembrane Helix	244	270	0.83
Non-Cytoplasmic	271	281	0.45
Transmembrane Helix	282	306	0.81
Cytoplasmic	307	308	0.45