YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145566549, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMPLRLTAS PKRLQQVLLR QPLMLYRIIS IVSVLLLGIT PAIAAPASGE FISNKRCELF  60
   61 QSKNKQTNPE QLQSNIGERY TVQEILGNTT NPQWLRVKTN AATSPLRWIS GSCGQYLTSV 120
  121 TNNDLSTPVS AMEPSQTTTA SDIKAINRDS LKEHSTKDQR QVSHCQLEGN FDSHVLALSW 180
  181 QSTFCELNGN RKAECSDLNK TDESPLWQQF SLHGLWPNRK QCGTRYGYCS TVKLQPSDFC 240
  241 SYPEIELNAS VRKNLEEVMP SARYGTCLER HQWWKHGTCR NQDPNDYFLL ATQLTQTINA 300
  301 SAWVKNFIHG NIGKQVTRQE LNTSFDKSFG QGAHTKMSLE CAKGLLSEIR INLPEVIKGS 360
  361 DSIPALLAKA NKAGKGSCPD TIIINNSN

Type	Start	End	Confidence
Signal Peptide	1	44	0.89
N-region	1	35
H-region	36	41
C-region	42	44
Cleavage Site	44	45
Non-Cytoplasmic	45	388	0.99