YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77813394, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERLFIRLG RNTEQACSWL VWSEQEQEII ASGELANAQG LATLTERAGN RPIDVLVPAS  60
   61 AMTLTSVNLP EKGQRQALKA LPFMLEEMLA DDVDAMHFTV GPRNGDALSV VAVAHEQMQT 120
  121 WLNCLTEAGL KVKRIVPDCL ALPLQECQWA AMRFGNELLL RTGSGTGQSL PLSWLPLAMK 180
  181 QLVTKDEDIS VASYTDFELE GVELKQQPLD LPMLVLARGI LNAPVNLLSG VYTPKREYSK 240
  241 YLMLWKNALI ILGVACVLAL VNKGLTIHQV NSQIADLKAQ SESIYQQVVP GNTRIVNLRS 300
  301 QMESQLRALQ GQGSGAEFFA MLAGLQDAFK QVPELKPNTL RFESARNEIR MQVTAKNYAQ 360
  361 IEKFKEIVGR RFQLDGGTMN SAEDQVTSTL TLRSK

Type	Start	End	Confidence
Cytoplasmic	1	242	0.51
Transmembrane Helix	243	262	0.68
Non-Cytoplasmic	263	395	0.90