YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68545794, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLIALVA LVPTLGFAAG GHNVHLEKAN IDLNDKESLV RGLDLFQHYC SGCHSTQYQR  60
   61 YERVANDLGV SIDEMRTKFV FTGAKVGELM ENAIPEKDAA KWFGAAPPDL TLAARVRGED 120
  121 WVYSYLKGFY KDPSRPFGVN NTVFPSVGMP HVLEGLQGIA VKQADGSLVA TGGKLSAEEY 180
  181 DQAARDITGF LVYSAEPIKL ERQALGIWVL GFLFIFFVVA YFLKKEYWKD VH

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	203	0.99
Transmembrane Helix	204	223	0.96
Cytoplasmic	224	232	0.94