YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68517296, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKQRGVALI VVLLIIAIVA VIATNVTARN QISMRRTMNL AQYDQGYWYA LSAEELARKV  60
   61 LKQDLDDSEG KVHLQQYWAL ANVVFPVQGG EIAGKISDMR ACFNLNALSV ESKEVENGQP 120
  121 QLPLAAKQFK ALLVALGVDD FGAERLTHTL KDYLDEDTVT SPFGAEDAEY ESRPAPYRAA 180
  181 NTLMNHKSEL RAVIGFTEEV YRNLSPYVCA IPGNDRQLLN INTLKVEQAA LLVGMLDGQL 240
  241 SVGEAESIIN QRPSEGFDNL DEFWQLTSVK PDDKLKSSIV LDSKFFLLEA GSKLDDRIFR 300
  301 LDSVLARTSG NHMDTLTRQY GGQQ

Type	Start	End	Confidence
Signal Peptide	1	28	0.84
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	324	0.99